About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_150728007_150736823_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
150728007 - 150736823
Intron Length:
8817

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATTTAA
5'SS Class:
strong_major
3'SS Sequence:
TGTTGTTTATCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
GTTTCATTATTT
Flanking Amino Acid:
MLLFPYDDFQTALLKRQSRY
Intron Amino Acid Position:
79

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.8
0.87
0.9
82.1
25.8
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
78.9
0.65
1
78
40.1
Minor 5ss
39.6
-1.2
2.8
49.5
46.6
Minor BPS
62.4
0.47
1.9
82.13
39.2

Associated Gene:

Gene:
DOCK9
Ensembl Gene ID:
ENSAPLG00000002862
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031834
150646801 - 150772846
126046
ENSAPLT00000003004
150646801 - 150744575
97775
ENSAPLT00000031839
150646801 - 150772846
126046