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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_150736941_150744458_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
150736941 - 150744458
Intron Length:
7518

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGAATC
5'SS Class:
strong_major
3'SS Sequence:
TTTCCTCTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACCTGAA
U12 Branch Point Sequence:
TATACCTGAATT
Flanking Amino Acid:
EGDSPAVVVMAKPKLIEPID
Intron Amino Acid Position:
40

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.7
0.84
0.9
80.7
31.6
Major BPS
60.8
0.27
1
51.3
35.5
Major PPT
84.6
0.78
0.7
77.6
31.1
Minor 5ss
38.2
-1.3
3.1
49.9
40.6
Minor BPS
70.3
0.72
1.4
83.42
37

Associated Gene:

Gene:
DOCK9
Ensembl Gene ID:
ENSAPLG00000002862
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003004
150646801 - 150744575
97775