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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_150736941_150772492_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
150736941 - 150772492
Intron Length:
35552

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTGCC
5'SS Class:
strong_major
3'SS Sequence:
TTTCCTCTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACCTGAA
U12 Branch Point Sequence:
TATACCTGAATT
Flanking Amino Acid:
SEVVRGSVLLAKPKLIEPID
Intron Amino Acid Position:
119

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.78
0.9
71.1
32.7
Major BPS
60.8
0.27
1
51.3
35.5
Major PPT
84.6
0.78
0.7
77.6
31.1
Minor 5ss
28.6
-2.4
3
32.8
35.9
Minor BPS
70.3
0.72
1.4
83.42
37

Associated Gene:

Gene:
DOCK9
Ensembl Gene ID:
ENSAPLG00000002862
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031834
150646801 - 150772846
126046
ENSAPLT00000031839
150646801 - 150772846
126046