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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_15074708_15081225_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
15074708 - 15081225
Intron Length:
6518

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTATA
5'SS Class:
strong_major
3'SS Sequence:
TCTCCCTTCACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGAAAAT
U12 Branch Point Sequence:
TCTCCCTTCACA
Flanking Amino Acid:
DRDTFSKSDPICVLYTQAIG
Intron Amino Acid Position:
208

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.8
0.91
0.8
89.9
22.1
Major BPS
55.4
0.14
1.3
61.7
41.5
Major PPT
81
0.7
0.7
75.4
26.7
Minor 5ss
41
-1
2.8
51.7
39.1
Minor BPS
67.9
0.56
1.8
76.69
40.5

Associated Gene:

Gene:
CPNE8
Ensembl Gene ID:
ENSAPLG00000015941
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036884
15061987 - 15092612
30626
ENSAPLT00000036076
15061987 - 15175580
113594
ENSAPLT00000016684
15061987 - 15173941
111955
ENSAPLT00000041949
15061987 - 15097564
35578