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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_150804726_150808929_R

Intron Information:

Intron Rank:
136657
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
150804726 - 150808929
Intron Length:
4204

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATCATA
5'SS Class:
strong_major
3'SS Sequence:
ACCCCAAATATAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
CTCTAAC
U12 Branch Point Sequence:
TCTGCTCTAACC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
1
79.9
35
Major BPS
72.3
0.55
1
73.3
28.9
Major PPT
55.5
0.12
0.9
47.8
32.6
Minor 5ss
43
-0.8
2.9
57.8
46.4
Minor BPS
59
0.26
1.8
70.56
41.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020966
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029946
150803851 - 150809059
5209