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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_15081273_15091745_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15081273 - 15091745
Intron Length:
10473

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGATGC
5'SS Class:
strong_major
3'SS Sequence:
GATCTGTTTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
ATGTTCTGATCT
Flanking Amino Acid:
QAIGNKEWREDPVHKCQPSL
Intron Amino Acid Position:
224

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.1
0.95
0.8
75.9
34.8
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
75.4
0.57
1
65.4
45.2
Minor 5ss
38.3
-1.3
3.1
50.9
45.7
Minor BPS
56.8
0.29
1.7
74.85
41.9

Associated Gene:

Gene:
CPNE8
Ensembl Gene ID:
ENSAPLG00000015941
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036884
15061987 - 15092612
30626