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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_150816075_150819688_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
150816075 - 150819688
Intron Length:
3614

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGGTC
5'SS Class:
strong_major
3'SS Sequence:
TTTAACCTTCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTAACAT
U12 Branch Point Sequence:
CAATGTTTAACC
Flanking Amino Acid:
NLQAIKEDFQIWRLVCGRAI
Intron Amino Acid Position:
170

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.7
0.96
0.8
81.9
31.6
Major BPS
71
0.52
1.1
77.7
35.3
Major PPT
76
0.58
0.9
67
40
Minor 5ss
33.8
-1.8
3.7
49.2
47.3
Minor BPS
57.9
0.23
1.8
63.96
41.7

Associated Gene:

Gene:
UBAC2
Ensembl Gene ID:
ENSAPLG00000004410
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004568
150810699 - 150897526
86828