About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_150819809_150820230_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
150819809 - 150820230
Intron Length:
422

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTAAGTTCC
5'SS Class:
strong_major
3'SS Sequence:
CTTTTTTTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
ATTAATTCAATT
Flanking Amino Acid:
ERRYGSRKFSSFLLGAWMLS
Intron Amino Acid Position:
210

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.6
0.86
0.9
76.2
34.2
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
94.5
1
0.6
88
29.4
Minor 5ss
41.9
-0.9
2.7
55
42.2
Minor BPS
52.1
0.14
1.7
72.55
38.3

Associated Gene:

Gene:
UBAC2
Ensembl Gene ID:
ENSAPLG00000004410
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004568
150810699 - 150897526
86828