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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_150866111_150867930_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
150866111 - 150867930
Intron Length:
1820

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGGTAT
5'SS Class:
strong_major
3'SS Sequence:
TCTTACCTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TAAATTTTAAAT
Flanking Amino Acid:
KTLVYILGLQLLTSGSYIWI
Intron Amino Acid Position:
287

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.6
0.79
0.9
77.4
33.4
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
82.8
0.74
0.8
73.7
36.6
Minor 5ss
44.5
-0.6
3.2
63.6
48.1
Minor BPS
59.9
0.39
1.4
71.88
38.5

Associated Gene:

Gene:
UBAC2
Ensembl Gene ID:
ENSAPLG00000004410
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004568
150810699 - 150897526
86828