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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_150867979_150879563_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
150867979 - 150879563
Intron Length:
11585

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTCTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTGCTTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
TATTTTTTAACT
Flanking Amino Acid:
YIWILALSGLISGICYNSSI
Intron Amino Acid Position:
303

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.4
0.93
0.8
83.5
35
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
85
0.79
0.8
77.9
36.6
Minor 5ss
40.3
-1.1
3.1
56.2
42.2
Minor BPS
83.8
1.14
0.9
92.59
29.1

Associated Gene:

Gene:
UBAC2
Ensembl Gene ID:
ENSAPLG00000004410
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004568
150810699 - 150897526
86828