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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_150936118_150937210_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
150936118 - 150937210
Intron Length:
1093

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGC|GTAAGTATA
5'SS Class:
major
3'SS Sequence:
TTTTCTAACTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAC
U12 Branch Point Sequence:
TTTTTTCTAACT
Flanking Amino Acid:
VESVLPYEYTAFDFCQAEGK
Intron Amino Acid Position:
24

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.6
0.53
1.3
78
38.6
Major BPS
84.6
0.86
0.8
83.9
22.3
Major PPT
79.4
0.66
0.9
78.6
33.5
Minor 5ss
40.3
-1.1
2.8
46.9
41.8
Minor BPS
73.3
0.81
1.6
92.08
30.2

Associated Gene:

Gene:
TM9SF2
Ensembl Gene ID:
ENSAPLG00000004699
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004913
150935814 - 150956824
21011