About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_150942340_150943541_F


Intron Information:

Intron Rank:
5

Intron Class:
major

Intron Phase:
0

Intron Coordinates:
150942340 - 150943541

Intron Length:
1202

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
AAC|GTATGTTCA

5'SS Class:
major

3'SS Sequence:
TTAATCATTCCAG|T

3'SS Class:
major_PPT

U2 Branch Point Sequence:
TTTTAAT

U12 Branch Point Sequence:
ATGTTTTTAATC

Flanking Amino Acid:
GRPKDACVINSEFHEKDTFY

Intron Amino Acid Position:
142

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
71.4
0.51
1.3
70.3
36.5

Major BPS
99.5
1.23
0.5
98.2
4.2

Major PPT
76.4
0.59
1
67.1
43.4

Minor 5ss
48
-0.2
2.3
57.9
40.1

Minor BPS
70.5
0.62
1.1
71.62
34

Associated Gene:

Gene:
TM9SF2

Ensembl Gene ID:

Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

150935814 - 150956824
21011