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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_150945803_150946041_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
150945803 - 150946041
Intron Length:
239

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGT|GTAAGTAAT
5'SS Class:
major
3'SS Sequence:
CTCTGCTTTGTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTAAT
U12 Branch Point Sequence:
AATTTCTGAAAT
Flanking Amino Acid:
QILIMTFVTLFFACLGFLSP
Intron Amino Acid Position:
328

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.2
0.64
1.1
80
34.8
Major BPS
77.9
0.69
0.8
75.9
25
Major PPT
77.9
0.63
0.8
72.7
32.1
Minor 5ss
39.4
-1.2
2.9
52.2
44.4
Minor BPS
63.5
0.5
1.5
78
37.4

Associated Gene:

Gene:
TM9SF2
Ensembl Gene ID:
ENSAPLG00000004699
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004913
150935814 - 150956824
21011