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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_150949180_150950664_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
150949180 - 150950664
Intron Length:
1485

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGTGTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTCATTTGAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TGTTACTTATTC
Flanking Amino Acid:
IGAYFGFKKNAIEHPVRTNQ
Intron Amino Acid Position:
441

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.4
0.86
0.9
87.3
27
Major BPS
100
1.24
0.5
100
0
Major PPT
78.7
0.65
1
80
31.2
Minor 5ss
41.1
-1
3.4
62.8
42
Minor BPS
60.6
0.31
1.8
72.27
38.8

Associated Gene:

Gene:
TM9SF2
Ensembl Gene ID:
ENSAPLG00000004699
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004913
150935814 - 150956824
21011