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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_150950817_150951812_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
150950817 - 150951812
Intron Length:
996

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTTAA
5'SS Class:
strong_major
3'SS Sequence:
AACTCTTTTATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
TGTTTTTGAAAA
Flanking Amino Acid:
IQLFFILNSIWSHQMYYMFG
Intron Amino Acid Position:
491

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.2
0.92
0.8
82
26.1
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
75
0.56
0.8
69.1
36.1
Minor 5ss
39.7
-1.2
2.8
45.9
43.7
Minor BPS
59.2
0.29
1.5
69.97
35.7

Associated Gene:

Gene:
TM9SF2
Ensembl Gene ID:
ENSAPLG00000004699
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004913
150935814 - 150956824
21011