About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_150951925_150952404_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
150951925 - 150952404
Intron Length:
480

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGAAGT
5'SS Class:
strong_major
3'SS Sequence:
CCACCGCTTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTCAC
U12 Branch Point Sequence:
TATTACTCACTT
Flanking Amino Acid:
LLCYFHLCAEDYHWQWRSFL
Intron Amino Acid Position:
529

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.3
1
0.8
84.6
33.3
Major BPS
77.2
0.68
0.8
77.6
26.2
Major PPT
63.9
0.31
0.9
53.8
36.4
Minor 5ss
35.2
-1.7
3
49.5
46.3
Minor BPS
50.8
0.1
2
74.62
42.1

Associated Gene:

Gene:
TM9SF2
Ensembl Gene ID:
ENSAPLG00000004699
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004913
150935814 - 150956824
21011