About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_150952577_150956756_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
150952577 - 150956756
Intron Length:
4180

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTATA
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTTTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTAAA
U12 Branch Point Sequence:
TAAAATGTATCC
Flanking Amino Acid:
IMVLIFFLFTGTIGFFACFW
Intron Amino Acid Position:
586

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
99
1.15
0.6
96.2
11.9
Major BPS
72.7
0.57
1
72.1
31.1
Major PPT
87.7
0.85
0.7
81.2
36.5
Minor 5ss
39.3
-1.2
2.8
50.9
45.5
Minor BPS
40
-0.7
2.2
50.11
40

Associated Gene:

Gene:
TM9SF2
Ensembl Gene ID:
ENSAPLG00000004699
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004913
150935814 - 150956824
21011