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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_151043199_151046037_F

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
151043199 - 151046037
Intron Length:
2839

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
ACA|GCAATTCCT
5'SS Class:
weak_major
3'SS Sequence:
TCTCCTCTGCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAC
U12 Branch Point Sequence:
ATATCCTTCACA
Flanking Amino Acid:
KEKMLCWAADTGVPKLSYHF
Intron Amino Acid Position:
11

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
55.6
0.13
1.4
63.8
42
Major BPS
81.3
0.78
0.8
83.4
26.1
Major PPT
75.1
0.57
0.9
69
37
Minor 5ss
28.8
-2.4
4
48.4
41
Minor BPS
71
0.66
1.7
78.87
37.2

Associated Gene:

Gene:
CLYBL
Ensembl Gene ID:
ENSAPLG00000005617
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005799
151043168 - 151119768
76601