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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_151097448_151099227_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
151097448 - 151099227
Intron Length:
1780

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCAGG
5'SS Class:
strong_major
3'SS Sequence:
CTCTCATTTGAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
TTCTGTAGAAAT
Flanking Amino Acid:
ETAVGLLNFKAVCEEALKAG
Intron Amino Acid Position:
165

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.9
72.7
44.5
Major BPS
83
0.82
0.8
82
24.9
Major PPT
70.9
0.47
1
71.3
32.2
Minor 5ss
38.8
-1.3
2.8
48.8
47
Minor BPS
44.2
-0.3
2.1
66.82
43.7

Associated Gene:

Gene:
CLYBL
Ensembl Gene ID:
ENSAPLG00000005617
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005799
151043168 - 151119768
76601