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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_151099322_151100751_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
151099322 - 151100751
Intron Length:
1430

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTTGTTACC
5'SS Class:
major
3'SS Sequence:
ATTCTTTTCATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTGTTTTCATT
Flanking Amino Acid:
FGGEDFRASIGATSSKETHD
Intron Amino Acid Position:
196

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
64.1
0.33
1.3
63.7
40.6
Major BPS
100
1.24
0.5
100
0
Major PPT
80.6
0.69
0.7
76.5
31.4
Minor 5ss
32
-2.1
2.7
38.7
39
Minor BPS
56.6
0.29
1.8
78.3
39.3

Associated Gene:

Gene:
CLYBL
Ensembl Gene ID:
ENSAPLG00000005617
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005799
151043168 - 151119768
76601