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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_151106183_151119672_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
151106183 - 151119672
Intron Length:
13490

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATATT
5'SS Class:
strong_major
3'SS Sequence:
CTCTCTTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTATAT
U12 Branch Point Sequence:
AAGTTTATATTC
Flanking Amino Acid:
AFEEHQRLGKGAFTFHGSMI
Intron Amino Acid Position:
294

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.5
0.96
0.8
93.3
21.1
Major BPS
79.2
0.73
1
75.3
39.4
Major PPT
87.2
0.84
0.7
79.8
32.2
Minor 5ss
41
-1
3
59.7
44.8
Minor BPS
44.3
-0.4
1.7
49.9
34.7

Associated Gene:

Gene:
CLYBL
Ensembl Gene ID:
ENSAPLG00000005617
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005799
151043168 - 151119768
76601