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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_1512068_1549727_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1512068 - 1549727
Intron Length:
37660

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGAGA
5'SS Class:
strong_major
3'SS Sequence:
CTTCTGTTCCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTGTAT
U12 Branch Point Sequence:
TATGTCTAAGCA
Flanking Amino Acid:
VWVKIQDVLQMLLTEYLDMK
Intron Amino Acid Position:
397

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90
0.94
0.8
78.7
37.2
Major BPS
53.8
0.09
1.6
57.4
49.1
Major PPT
80.1
0.68
0.8
72.1
37.9
Minor 5ss
31.6
-2.1
3.1
40
45.7
Minor BPS
48.6
-0.1
2
63.72
42.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005625
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005852
1507728 - 1607545
99818