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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_151208947_151217114_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
151208947 - 151217114
Intron Length:
8168

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGAGCC
5'SS Class:
strong_major
3'SS Sequence:
CTCTCTTCTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTTAA
U12 Branch Point Sequence:
AAATGTTTAACT
Flanking Amino Acid:
ARGRLRALLECETLCLRRYL
Intron Amino Acid Position:
19

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.8
0.84
0.8
72.1
31.2
Major BPS
72.1
0.55
1.1
63.7
43.9
Major PPT
85
0.79
0.7
80.2
25.2
Minor 5ss
26.3
-2.7
3.1
33.4
42
Minor BPS
63.5
0.5
1.7
76.44
39.9

Associated Gene:

Gene:
PCCA
Ensembl Gene ID:
ENSAPLG00000002609
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002674
151208893 - 151485708
276816