About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_151217193_151220002_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
151217193 - 151220002
Intron Length:
2810

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTAGC
5'SS Class:
strong_major
3'SS Sequence:
CTTTCCCTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
AGGTCTTTATTG
Flanking Amino Acid:
YSATYDPNEKTFEKLLIANR
Intron Amino Acid Position:
45

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.5
0.98
0.7
81.3
32.8
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
85.8
0.81
0.7
77.3
31.4
Minor 5ss
30.6
-2.2
2.6
36.7
40.4
Minor BPS
52.2
-0
1.7
53.99
41.8

Associated Gene:

Gene:
PCCA
Ensembl Gene ID:
ENSAPLG00000002609
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022973
151217052 - 151472829
255778
ENSAPLT00000002680
151217052 - 151485708
268657
ENSAPLT00000047183
151217052 - 151485143
268092
ENSAPLT00000002674
151208893 - 151485708
276816
ENSAPLT00000030060
151217052 - 151484567
267516
ENSAPLT00000029533
151217052 - 151473953
256902