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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_151220051_151220144_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
151220051 - 151220144
Intron Length:
94

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGA|GTAAGTATA
5'SS Class:
major
3'SS Sequence:
TCTTATATGGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
GTATTTTAAATA
Flanking Amino Acid:
IANRGEIACRVIKTCKKMGI
Intron Amino Acid Position:
61

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.2
0.69
1
80.8
33.6
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
69.4
0.44
1
66.6
39
Minor 5ss
40.6
-1.1
2.8
47.9
41.8
Minor BPS
55.3
0.16
1.6
63.91
37

Associated Gene:

Gene:
PCCA
Ensembl Gene ID:
ENSAPLG00000002609
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029533
151217052 - 151473953
256902
ENSAPLT00000022973
151217052 - 151472829
255778
ENSAPLT00000002680
151217052 - 151485708
268657
ENSAPLT00000047183
151217052 - 151485143
268092
ENSAPLT00000002674
151208893 - 151485708
276816
ENSAPLT00000030060
151217052 - 151484567
267516