Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_151220214_151251897_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

151220214 - 151251897

Intron Length:

31684

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GCT|GTAAGTACT

5'SS Class:

major

3'SS Sequence:

ATTCCCTCCTCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGTTAAT

U12 Branch Point Sequence:

CATCTGTTAATG

Flanking Amino Acid:

AIHSDVDANAVHVKMADEAV

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

76.8

0.63

1.1

77.8

36.6

Major BPS

84.4

0.85

34.5

Major PPT

76.9

0.61

0.8

30.3

Minor 5ss

41.3

-1

2.8

62.9

Minor BPS

47.7

-0.3

2.1

53.1

42.3

Associated Gene:

Gene:

PCCA

Ensembl Gene ID:

ENSAPLG00000002609

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000022973

151217052 - 151472829

255778

ENSAPLT00000002680

151217052 - 151485708

268657

ENSAPLT00000047183

151217052 - 151485143

268092

ENSAPLT00000002674

151208893 - 151485708

276816

ENSAPLT00000030060

151217052 - 151484567

267516

ENSAPLT00000029533

151217052 - 151473953

256902