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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_151252012_151253514_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
151252012 - 151253514
Intron Length:
1503

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCT|GTGAGTCTG
5'SS Class:
major
3'SS Sequence:
TTTATTTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
TCAACTTAAACT
Flanking Amino Acid:
EVIKETRAQAVHPGYGFLSE
Intron Amino Acid Position:
122

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.2
0.45
1.1
62.1
43.9
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
92.4
0.95
0.7
87.7
29.7
Minor 5ss
35.3
-1.7
3.1
51.2
45.1
Minor BPS
58.6
0.35
1.7
73.13
43.8

Associated Gene:

Gene:
PCCA
Ensembl Gene ID:
ENSAPLG00000002609
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022973
151217052 - 151472829
255778
ENSAPLT00000002680
151217052 - 151485708
268657
ENSAPLT00000047183
151217052 - 151485143
268092
ENSAPLT00000002674
151208893 - 151485708
276816
ENSAPLT00000030060
151217052 - 151484567
267516
ENSAPLT00000029533
151217052 - 151473953
256902