About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_15131869_15137939_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
15131869 - 15137939
Intron Length:
6071

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGACAT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCAATATAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
TTTTTTTCAATA
Flanking Amino Acid:
VEVYDWDRDGSHDFIGEFTT
Intron Amino Acid Position:
402

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.1
0.97
0.8
80.7
33.7
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
79
0.65
0.9
74.9
33.8
Minor 5ss
33.6
-1.9
3.2
47.4
48
Minor BPS
68.8
0.59
1.4
78.75
31.7

Associated Gene:

Gene:
CPNE8
Ensembl Gene ID:
ENSAPLG00000015941
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036076
15061987 - 15175580
113594