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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_151336966_151346445_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
151336966 - 151346445
Intron Length:
9480

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAACTACA
5'SS Class:
strong_major
3'SS Sequence:
GTTTTGTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATAAT
U12 Branch Point Sequence:
TTCACCTGATTT
Flanking Amino Acid:
EEALDNYVIRGVTHNISLLR
Intron Amino Acid Position:
460

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
1.1
80.7
33.8
Major BPS
80
0.75
1
78.6
31
Major PPT
87.1
0.84
0.8
84.6
36
Minor 5ss
41.6
-0.9
2.5
52.6
44
Minor BPS
54.2
0.21
1.8
73.55
43.5

Associated Gene:

Gene:
PCCA
Ensembl Gene ID:
ENSAPLG00000002609
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022973
151217052 - 151472829
255778
ENSAPLT00000002680
151217052 - 151485708
268657
ENSAPLT00000047183
151217052 - 151485143
268092
ENSAPLT00000002674
151208893 - 151485708
276816
ENSAPLT00000030060
151217052 - 151484567
267516
ENSAPLT00000029533
151217052 - 151473953
256902