Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_151346557_151355331_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

151346557 - 151355331

Intron Length:

8775

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTTTGTTCT

5'SS Class:

major

3'SS Sequence:

TTTTGAAAACTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTTAT

U12 Branch Point Sequence:

TTTTTTATAACT

Flanking Amino Acid:

LPEVYPDGFKGHKLTDLERR

Intron Amino Acid Position:

497

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

76.8

0.63

1.1

75.3

Major BPS

96.5

1.15

0.6

34.2

Major PPT

61.1

0.25

1.1

54.4

44.1

Minor 5ss

45.3

-0.5

2.4

60.2

44.2

Minor BPS

74.1

0.84

1.5

92.32

29.7

Associated Gene:

Gene:

PCCA

Ensembl Gene ID:

ENSAPLG00000002609

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000002674

151208893 - 151485708

276816

ENSAPLT00000030060

151217052 - 151484567

267516

ENSAPLT00000029533

151217052 - 151473953

256902

ENSAPLT00000022973

151217052 - 151472829

255778

ENSAPLT00000002680

151217052 - 151485708

268657

ENSAPLT00000047183

151217052 - 151485143

268092