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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_15138016_15145700_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15138016 - 15145700
Intron Length:
7685

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
TCTGTGTTTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTAAT
U12 Branch Point Sequence:
ACTGCTTTAATA
Flanking Amino Acid:
RGQSQFNVYEVINPKKKGKK
Intron Amino Acid Position:
414

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
100
1.18
0.6
100
0
Major BPS
87.2
0.92
0.9
87.6
25.6
Major PPT
77.3
0.61
0.9
69.2
41.8
Minor 5ss
41.7
-0.9
2.9
59.7
44.8
Minor BPS
66.7
0.52
1.3
68.85
38.5

Associated Gene:

Gene:
CPNE8
Ensembl Gene ID:
ENSAPLG00000015941
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036076
15061987 - 15175580
113594
ENSAPLT00000016684
15061987 - 15173941
111955