About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_151416672_151429591_F

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
151416672 - 151429591
Intron Length:
12920

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATTCA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCTTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
CAGTTTTTAAAT
Flanking Amino Acid:
TIDGTQRTIQRLSRNASGST
Intron Amino Acid Position:
599

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.9
0.87
0.9
80.1
28.4
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
97.2
1.06
0.5
96.4
12.2
Minor 5ss
39.8
-1.1
2.8
50.7
45.7
Minor BPS
60.7
0.42
1.4
69.43
41.8

Associated Gene:

Gene:
PCCA
Ensembl Gene ID:
ENSAPLG00000002609
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022973
151217052 - 151472829
255778
ENSAPLT00000002680
151217052 - 151485708
268657
ENSAPLT00000047183
151217052 - 151485143
268092
ENSAPLT00000002674
151208893 - 151485708
276816
ENSAPLT00000030060
151217052 - 151484567
267516
ENSAPLT00000029533
151217052 - 151473953
256902