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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_15144185_15144225_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
15144185 - 15144225
Intron Length:
41

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
TGG|GCACTTAAT
5'SS Class:
major
3'SS Sequence:
GCTGCTAACTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACTTAAT
U12 Branch Point Sequence:
ATGCTGCTAACT
Flanking Amino Acid:
EAKDSDKSLFGLTTGFWSER
Intron Amino Acid Position:
36

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
63.8
0.33
1.3
65.3
45.8
Major BPS
78.2
0.7
1
77.9
32.1
Major PPT
62.6
0.28
1
58.9
40.9
Minor 5ss
25.6
-2.8
3.8
33.3
42
Minor BPS
46.1
-0.2
2.3
68.12
42.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023841
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046318
15141762 - 15144331
2570