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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_151471463_151483552_F

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
151471463 - 151483552
Intron Length:
12090

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGAAAC
5'SS Class:
strong_major
3'SS Sequence:
TTAATTTTACCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
ACTGCTTTAATT
Flanking Amino Acid:
VAVSVKPGDMVSEGQEICVI
Intron Amino Acid Position:
664

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.6
0.82
0.9
76.9
31.6
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
76.7
0.6
1
70.6
44.1
Minor 5ss
33.9
-1.8
2.9
40.8
39.5
Minor BPS
69.3
0.68
1.3
77.48
40

Associated Gene:

Gene:
PCCA
Ensembl Gene ID:
ENSAPLG00000002609
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030060
151217052 - 151484567
267516
ENSAPLT00000002680
151217052 - 151485708
268657
ENSAPLT00000002674
151208893 - 151485708
276816
ENSAPLT00000047183
151217052 - 151485143
268092