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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_151483631_151484985_F

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
151483631 - 151484985
Intron Length:
1355

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCTAC
5'SS Class:
strong_major
3'SS Sequence:
TCTTTTTAACCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
CTCTTTTTAACC
Flanking Amino Acid:
NSMIAAKTGK*
Intron Amino Acid Position:
693

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.8
0.94
0.9
78.4
32.4
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
79
0.65
0.9
74.5
39.2
Minor 5ss
44.1
-0.6
2.9
58.3
46.6
Minor BPS
71.9
0.67
1.2
72.92
38.9

Associated Gene:

Gene:
PCCA
Ensembl Gene ID:
ENSAPLG00000002609
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047183
151217052 - 151485143
268092