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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_15149215_15155732_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
15149215 - 15155732
Intron Length:
6518

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTATGTGAT
5'SS Class:
major
3'SS Sequence:
GCTTATTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTGAT
U12 Branch Point Sequence:
ATTTGCTTATTT
Flanking Amino Acid:
EVSFLDYIKGGTQINFTVAI
Intron Amino Acid Position:
452

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.5
0.7
1
74
36.6
Major BPS
88.6
0.96
0.8
77.7
37.1
Major PPT
82.4
0.73
0.9
75.8
37.8
Minor 5ss
40
-1.1
3.2
48.8
47.3
Minor BPS
61.2
0.43
2
82.08
39.9

Associated Gene:

Gene:
CPNE8
Ensembl Gene ID:
ENSAPLG00000015941
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016684
15061987 - 15173941
111955
ENSAPLT00000036076
15061987 - 15175580
113594