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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_151523610_151524128_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
151523610 - 151524128
Intron Length:
519

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGAGCT
5'SS Class:
strong_major
3'SS Sequence:
ACTGATGTTCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTCAA
U12 Branch Point Sequence:
AAATTCTTCACT
Flanking Amino Acid:
PNAASYHGNLAVLYHRWGNL
Intron Amino Acid Position:
570

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
1
72.5
37.3
Major BPS
83
0.82
0.8
83.9
25.3
Major PPT
68.8
0.42
1
57.9
46.6
Minor 5ss
32.6
-2
3.4
40.6
45.1
Minor BPS
62.1
0.46
1.7
76.2
40.1

Associated Gene:

Gene:
TMTC4
Ensembl Gene ID:
ENSAPLG00000002783
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002838
151523458 - 151564681
41224