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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_151524199_151529711_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
151524199 - 151529711
Intron Length:
5513

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGTAAC
5'SS Class:
strong_major
3'SS Sequence:
CTAAATTATTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
TTCTTCTAAATT
Flanking Amino Acid:
NVLGKSQKYKESEALFLKAI
Intron Amino Acid Position:
547

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.5
0.88
0.9
81.4
32.7
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
69.6
0.44
1
66.2
43.8
Minor 5ss
34.6
-1.7
3
44.4
43.7
Minor BPS
68
0.64
1.6
82.74
39.5

Associated Gene:

Gene:
TMTC4
Ensembl Gene ID:
ENSAPLG00000002783
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002838
151523458 - 151564681
41224