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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_151530421_151531071_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
151530421 - 151531071
Intron Length:
651

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTGAGTATT
5'SS Class:
strong_major
3'SS Sequence:
TCTTTCCTTTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAGTAAA
U12 Branch Point Sequence:
GTGACATTACTA
Flanking Amino Acid:
PDCYYNLGRLYADLNRHIDA
Intron Amino Acid Position:
471

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.8
0.89
0.8
88.7
25.1
Major BPS
58.6
0.22
1.1
59.7
34.6
Major PPT
86.6
0.82
0.6
85.4
22
Minor 5ss
36.4
-1.5
3
48.3
41.8
Minor BPS
47.5
-0.2
1.9
58.01
41.5

Associated Gene:

Gene:
TMTC4
Ensembl Gene ID:
ENSAPLG00000002783
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002838
151523458 - 151564681
41224