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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_151531442_151531614_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
151531442 - 151531614
Intron Length:
173

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTAGAA
5'SS Class:
major
3'SS Sequence:
TTTTACATTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATAAT
U12 Branch Point Sequence:
AATCTCTTAAAT
Flanking Amino Acid:
AAIKYYREAVRLNPKYVHAM
Intron Amino Acid Position:
387

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73
0.54
1
65.9
33.2
Major BPS
80
0.75
1
78.6
31
Major PPT
81.2
0.7
0.8
79.1
33.8
Minor 5ss
35.9
-1.6
3.3
47
48.4
Minor BPS
67.7
0.63
1.4
78.58
36.6

Associated Gene:

Gene:
TMTC4
Ensembl Gene ID:
ENSAPLG00000002783
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044962
151523971 - 151564681
40711
ENSAPLT00000002838
151523458 - 151564681
41224