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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_151562141_151564136_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
151562141 - 151564136
Intron Length:
1996

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGACTT
5'SS Class:
strong_major
3'SS Sequence:
TGTTTGTATACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAA
U12 Branch Point Sequence:
TTAACCTTAATG
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.8
80.6
33.8
Major BPS
82.2
0.8
0.8
71.9
35.8
Major PPT
78.7
0.65
1
72.9
41.4
Minor 5ss
32.5
-2
3.3
47.4
48
Minor BPS
74.5
0.63
1.3
73.31
39.1

Associated Gene:

Gene:
TMTC4
Ensembl Gene ID:
ENSAPLG00000002783
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044962
151523971 - 151564681
40711
ENSAPLT00000002838
151523458 - 151564681
41224