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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_151571576_151572391_F

Intron Information:

Intron Rank:
143195
Intron Class:
major
Intron Phase:
Intron Coordinates:
151571576 - 151572391
Intron Length:
816

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGGATC
5'SS Class:
strong_major
3'SS Sequence:
TGTTCTGTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATAAT
U12 Branch Point Sequence:
ACTTTTATAATG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.75
0.9
79.7
33.7
Major BPS
87.8
0.94
0.9
86.6
28.1
Major PPT
83.3
0.75
0.9
80.8
36.8
Minor 5ss
38.5
-1.3
3.3
52.3
38.8
Minor BPS
52.5
-0
1.6
57.57
38.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027143
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036936
151571022 - 151576221
5200