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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_151572595_151575216_F

Intron Information:

Intron Rank:
143196
Intron Class:
major
Intron Phase:
Intron Coordinates:
151572595 - 151575216
Intron Length:
2622

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTATC
5'SS Class:
strong_major
3'SS Sequence:
TCCATTTTCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
TTGTCTTTTATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.2
1.04
0.7
90.4
20.6
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
80
0.68
0.8
74.9
33.4
Minor 5ss
34.8
-1.7
2.8
44.9
43.2
Minor BPS
68.7
0.67
1.6
83.31
38.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027143
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036936
151571022 - 151576221
5200