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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_151575101_151575216_F

Intron Information:

Intron Rank:
143193
Intron Class:
major
Intron Phase:
Intron Coordinates:
151575101 - 151575216
Intron Length:
116

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACGAGGA
5'SS Class:
strong_major
3'SS Sequence:
TCCATTTTCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
TTGTCTTTTATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.1
0.71
1
66.3
39.8
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
80
0.68
0.8
74.9
33.4
Minor 5ss
28.7
-2.4
3.4
38.8
46.3
Minor BPS
68.7
0.67
1.6
83.31
38.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027143
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030717
151575000 - 151576012
1013