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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_151635918_151643324_F

Intron Information:

Intron Rank:
133355
Intron Class:
major
Intron Phase:
Intron Coordinates:
151635918 - 151643324
Intron Length:
7407

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTAGG
5'SS Class:
strong_major
3'SS Sequence:
GTTTCTCCTGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTAAT
U12 Branch Point Sequence:
AGAAAACTAATG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.5
0.96
0.8
77.8
38.7
Major BPS
77.9
0.69
0.8
75.9
25
Major PPT
79.6
0.67
0.8
74.4
30.8
Minor 5ss
29.7
-2.3
2.6
33.4
41.8
Minor BPS
39
-0.9
1.9
40
36.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021711
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047953
151635764 - 151651217
15454