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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_15165965_15168775_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
15165965 - 15168775
Intron Length:
2811

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTGTT
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTTTTTAAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
GATAAATTAATT
Flanking Amino Acid:
IVGVGPAEFDAMEELDGDVV
Intron Amino Acid Position:
625

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.6
0.96
0.8
87
27.7
Major BPS
83
0.82
0.8
82
24.9
Major PPT
84.3
0.77
0.9
90.2
22.9
Minor 5ss
38.8
-1.3
3.4
55
43.6
Minor BPS
51.1
0.11
1.8
69.66
40.4

Associated Gene:

Gene:
CPNE8
Ensembl Gene ID:
ENSAPLG00000015941
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036076
15061987 - 15175580
113594
ENSAPLT00000016684
15061987 - 15173941
111955