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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_151704432_151704585_F

Intron Information:

Intron Rank:
130932
Intron Class:
major
Intron Phase:
Intron Coordinates:
151704432 - 151704585
Intron Length:
154

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTTCT
5'SS Class:
strong_major
3'SS Sequence:
TGAAATTTTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
CTTTTCATAATA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.3
1.11
0.7
90.5
21.5
Major BPS
100
1.24
0.5
100
0
Major PPT
73.9
0.54
1
69.7
45.3
Minor 5ss
42.8
-0.8
2.8
59.5
45
Minor BPS
65.8
0.49
1.6
75.53
36.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020313
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027654
151703564 - 151705012
1449