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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_151751005_151751676_R

Intron Information:

Intron Rank:
41
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
151751005 - 151751676
Intron Length:
672

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGTTAA
5'SS Class:
strong_major
3'SS Sequence:
TTTCTCTGTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATGTGAT
U12 Branch Point Sequence:
AGAACTTTACCT
Flanking Amino Acid:
INQDNSAQPETSSQQQLLSP
Intron Amino Acid Position:
1636

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.8
82
26.2
Major BPS
72.4
0.56
1.2
63.1
44.4
Major PPT
85.5
0.8
0.8
84.7
30.2
Minor 5ss
45.6
-0.5
2.5
57.6
47.1
Minor BPS
55
0.24
1.7
68.87
41.7

Associated Gene:

Gene:
NALCN
Ensembl Gene ID:
ENSAPLG00000003120
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003194
151748952 - 151967465
218514
ENSAPLT00000032563
151748952 - 151967465
218514
ENSAPLT00000022188
151748952 - 151967465
218514