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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_151754087_151754764_R

Intron Information:

Intron Rank:
39
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
151754087 - 151754764
Intron Length:
678

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACTATGA
5'SS Class:
major
3'SS Sequence:
ATGTTTCTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATAAA
U12 Branch Point Sequence:
GCATTTATAAAA
Flanking Amino Acid:
GGDVTFHDVLSMLSYRSVDI
Intron Amino Acid Position:
1535

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.6
0.49
1.1
61.7
39.7
Major BPS
78.6
0.71
1
78.6
31
Major PPT
82.5
0.73
0.9
74.1
41
Minor 5ss
36.3
-1.6
3.2
48.5
47
Minor BPS
47.6
-0.1
1.6
54.66
37.7

Associated Gene:

Gene:
NALCN
Ensembl Gene ID:
ENSAPLG00000003120
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032563
151748952 - 151967465
218514
ENSAPLT00000022188
151748952 - 151967465
218514
ENSAPLT00000003194
151748952 - 151967465
218514