About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_151758438_151759268_R

Intron Information:

Intron Rank:
36
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
151758438 - 151759268
Intron Length:
831

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAATACA
5'SS Class:
major
3'SS Sequence:
TATTGTTTTAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTTATAAATA
Flanking Amino Acid:
DWNKIMHDCMVQPPFCTPDN
Intron Amino Acid Position:
1400

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1
75.7
33.2
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
74.6
0.55
1.1
74.8
38.8
Minor 5ss
35.5
-1.6
2.7
40.3
40.5
Minor BPS
59
0.28
1.9
75.76
35.9

Associated Gene:

Gene:
NALCN
Ensembl Gene ID:
ENSAPLG00000003120
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003194
151748952 - 151967465
218514
ENSAPLT00000032563
151748952 - 151967465
218514
ENSAPLT00000022188
151748952 - 151967465
218514